| Saturday 18 August 2012 |
| AFC Wimbledon v Chesterfield |
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| Tuesday 21 August 2012 |
| Burton Albion v AFC Wimbledon |
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| Saturday 25 August 2012 |
| Bradford City v AFC Wimbledon |
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| Saturday 01 September 2012 |
| AFC Wimbledon v Dagenham & Redbridge |
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| Saturday 08 September 2012 |
| Northampton Town v AFC Wimbledon |
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| Saturday 15 September 2012 |
| AFC Wimbledon v Rochdale |
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| Tuesday 18 September 2012 |
| AFC Wimbledon v Torquay United |
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| Saturday 22 September 2012 |
| Wycombe Wanderers v AFC Wimbledon |
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| Saturday 29 September 2012 |
| AFC Wimbledon v Accrington Stanley |
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| Tuesday 02 October 2012 |
| Oxford United v AFC Wimbledon |
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| Saturday 06 October 2012 |
| Plymouth Argyle v AFC Wimbledon |
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| Saturday 13 October 2012 |
| AFC Wimbledon v Cheltenham Town |
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| Saturday 20 October 2012 |
| Fleetwood Town v AFC Wimbledon |
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| Tuesday 23 October 2012 |
| AFC Wimbledon v Bristol Rovers |
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| Saturday 27 October 2012 |
| AFC Wimbledon v Gillingham |
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| Tuesday 06 November 2012 |
| Exeter City v AFC Wimbledon |
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| Saturday 10 November 2012 |
| York City v AFC Wimbledon |
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| Saturday 17 November 2012 |
| AFC Wimbledon v Aldershot Town |
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| Tuesday 20 November 2012 |
| AFC Wimbledon v Southend United |
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| Saturday 24 November 2012 |
| Morecambe v AFC Wimbledon |
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| Saturday 08 December 2012 |
| Barnet v AFC Wimbledon |
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| Saturday 15 December 2012 |
| AFC Wimbledon v Rotherham United |
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| Saturday 22 December 2012 |
| Port Vale v AFC Wimbledon |
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| Wednesday 26 December 2012 |
| AFC Wimbledon v Northampton Town |
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| Saturday 29 December 2012 |
| AFC Wimbledon v Oxford United |
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| Tuesday 01 January 2013 |
| Torquay United v AFC Wimbledon |
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| Saturday 05 January 2013 |
| Rochdale v AFC Wimbledon |
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| Saturday 12 January 2013 |
| AFC Wimbledon v Wycombe Wanderers |
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| Saturday 19 January 2013 |
| Accrington Stanley v AFC Wimbledon |
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| Saturday 26 January 2013 |
| AFC Wimbledon v Port Vale |
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| Saturday 02 February 2013 |
| AFC Wimbledon v Burton Albion |
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| Saturday 09 February 2013 |
| Chesterfield v AFC Wimbledon |
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| Saturday 16 February 2013 |
| AFC Wimbledon v Bradford City |
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| Saturday 23 February 2013 |
| Dagenham & Redbridge v AFC Wimbledon |
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| Tuesday 26 February 2013 |
| AFC Wimbledon v Plymouth Argyle |
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| Saturday 02 March 2013 |
| Cheltenham Town v AFC Wimbledon |
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| Saturday 09 March 2013 |
| AFC Wimbledon v York City |
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| Tuesday 12 March 2013 |
| Southend United v AFC Wimbledon |
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| Saturday 16 March 2013 |
| Aldershot Town v AFC Wimbledon |
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| Saturday 23 March 2013 |
| AFC Wimbledon v Morecambe |
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| Friday 29 March 2013 |
| Rotherham United v AFC Wimbledon |
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| Monday 01 April 2013 |
| AFC Wimbledon v Barnet |
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| Saturday 06 April 2013 |
| Bristol Rovers v AFC Wimbledon |
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| Saturday 13 April 2013 |
| AFC Wimbledon v Exeter City |
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| Saturday 20 April 2013 |
| Gillingham v AFC Wimbledon |
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| Saturday 27 April 2013 |
| AFC Wimbledon v Fleetwood Town |